Journal Articles

• Y.  Aboelkassem and H. E. Taha (2022)

               A Cooperative Epidemiological Model of Infectious Disease Dynamics: 

              A   COVID-19 Case Study. 

               Advances in Nonlinear Dynamics (Book Chapter), pp. 39-48, 2022

• MA. Bahloul , Y.  Aboelkassem and T-M Laleg-Kirati (2022)

               Hypertension Blood Flow Model Using Fractional Calculus.
              Front. Physiol. Vol 13, pp. 838593, 

• Y.  Aboelkassem and D. Savic (2021)            

              Particle swarm optimizer for arterial blood flow models            

              Comput Methods Programs Biomed. Vol. 201 pp. 105933.

• SA Niederer, Y.  Aboelkassem, Cantwell, ...,  RW dos Santos and L. Wang (2020)

          Creation and Application of Virtual  Patient Cohorts of Heart Models.
          Phil Trans Roy Soc A. Vol. 378 pp. 20190558, 2020

• RH  Clayton, Y.  Aboelkassem, CD Cantwell, ... C Roney, and RW dos Santos (2020)   An Audit of Uncertainty in Multi-Scale Cardiac Electrophysiology  Models. Phil Trans Roy Soc A. Vol. 378 pp. 20190335

• D.  Tripathi, VK Narla, Y.  Aboelkassem (2020), 

               Electrokinetic membrane  pumping flow model in a microchannel. 

               Phys. Fluids. Vol. 32 pp. 082004

• S  Cao, Y.  Aboelkassem, A Wang, JS Saucerman, JH Omens, McCulloch AD  (2020), Quantification and Data Uncertainty in a Network Model of  Cardiac Myocyte Mechanosignaling. Phil Trans Roy Soc A. Vol. 378  pp.20190336

• CL Lei, S Ghosh, D  Whittaker, Aboelkassem Y., ....,GR. Mirams and R Wilkinson, (2020),  Considering Discrepancy when Calibrating a Mechanistic
  Electrophysiology Model. Phil. Trans. R. Soc. A 378: 20190349.

• A. Wang, S Cao, Y Aboelkassem, Valdez-Jasso D (2020), Uncertainty Quantification of A New Network Model of Pulmonary
  Arterial Adventitial Fibroblast Pro-Fibrotic Signalling.  Phil Trans Roy Soc A. Vol. 378 pp. 20190338

• Y.  Aboelkassem,  J. Powers, K. McCabe, and AD. McCulloch (2019),  Multiscale Models of Cardiac Muscle Biophysics and Tissue Remodeling in
  Hypertrophic Cardiomyopathies. Curr Op BME, Vol. 11, pp. 35-44.

• Y.  Aboelkassem, K. McCabe, G. Huber, M. Regnier, JA. McCammon and AD.  McCulloch (2019), A Stochastic Multiscale Model of Cardiac Thin Filament  Activation using Brownian-Langevin Dynamics. Biophysical J., Vol. 117  (12), pp. 2255-2272

• Aboelkassem, Y.  (2019),  Pumping Flow Model in a Microchannel with Propagative Rhythmic  Membrane Contraction. Phys. Fluids, Vol. 31 (5), pp. 051902

• Aboelkassem,  Y. , and Z. Virag (2019),  A Hybrid Windkessel-Womersley Model for  Blood Flow in Arteries. J. of Theoretical Biology, Vol. 462 (7), pp.  499-513.

• Tan M. P., K. S. Buchholz,  S. Cao, Y. Aboelkassem, J. H. Omens, A. D. McCulloch, J. J. Saucerman  (2019), Systems Modeling of Cardiomyocyte Mechanobiology. Molecular  & Cellular Biomechanics, Vol. 16, pp. 13-14.

• Aboelkassem,  Y. and N. Trayanova 

              Tropomyosin Dynamics During Cardiac Thin  Filament Activation as Governed by a    

              Multi-Well Energy Landscape. Prog  Biophys Mol Biol, Vol. 144, pp. 102-115, 2019

• Aboelkassem, Y. (2017), Stokes Flow Patterns Induced by a Single Cardiac Cell. Compu Biol Med., Vol. 86, pp.35-74.

• Aboelkassem,  Y., and S. G. Campbell

              Acute Optogenetic Modulation of Cardiac  Twitch Dynamics Explored Through   

              Modeling. J. of Biomechanical  Engineering, Vol. 138 (11), 2016

• Aboelkassem,  Y., J. A. Bonilla, K. McCabe, and S. G. Campbell (2016), Contributions  of Ca++ Independent Thin Filament Activation to Cardiac Muscle Function.  Biophysical J., Vol. 109 (10), pp. 2101-2112.

• Aboelkassem,  Y. (2016), Chaotic mixing by oscillating a Stokeslet in a circular  Hele-Shaw microfluidic device. Nanoscale Syst.: Math. Model. Theory  Appl, Vol. 5, pp. 1-8.

• Aboelkassem,  Y., D. Savic and S. G. Campbell (2015), Mathematical Modeling of the  Aortic Valve Dynamics during Systole. J. of Theoretical Biology, Vol.  365, pp. 280-288.

• Aboelkassem, Y.,  D. Savic, and S. G. Campbell (2015), Modeling Predicts A Connection  Between Sinus Vortex Eeffects and Aortic Compliance. J. of Theoretical  Biology, Vol.389, pp. 306-309.

• Aboelkassem,  Y. (2015) (Invited Article), Insect-Inspired Micropump: Flow in a Tube  with Local Contractions. Micromachines, Vol. 8, pp. 1143-1156.

• Aboelkassem, Y. (2015), A Ghost-Valve Micropumping Paradigm for Biomedical Applications. Biomed. Eng. Lett., Vol. 5, pp. 45-50.

•  Aboelkassem,  Y., and A. E. Staples (2014), A three-dimensional model for flow  pumping in a microchannel inspired by insect respiration. Acta  Mechanica, Vol. 225 (2), pp. 493-507.

•  Aboelkassem,  Y., and A. E. Staples (2013), Selective Pumping in a Network:  Insect-Style Microscale Flow Transport. Bioinspiration \&  Biomimetics, Vol. 8, pp. 026004.

• Aboelkassem,Y.,  A. E. Staples (2013), A Bioinspired Pumping Model for Flow in a  Microtube with Rhythmic Wall Contractions'', J. of Fluids and  Structures, Vol. 42, pp. 187-204.

• Aboelkassem,  Y., and A. E. Staples (2013), Stokeslets-Meshfree Computations and  Theory for Flow in a Collapsible Microchannel. Theoretical \&  Computational Fluid Dynamics, Vol. 27, pp. 681-700. 

• Aboelkassem,  Y., and A. E. Staples (2012), Flow Transport in a Microchannel Induced  by Moving Wall Contractions: A Novel Micropump Mechanism. Acta  Mechanica, Vol. 223 (3), pp. 463-480.

•  Aboelkassem,  Y., AH Nayfeh and M. Ghommem, (2010), Bio-Mass Sensor using an  Electrostatically Actuated Microcantilever in a Vacuum Microchannel. J.  of Microsystems Technologies, Vol. 39 (2), pp. 183-192.

• Aboelkassem,  Y. (2011), Numerical Simulations of Electroosmotic Complex Flow  Patterns in a Microchannel. Computers and Fluids, Vol. 52, pp. 104-115.

• Aboelkassem,  Y. (2010), Electroosmotic flow in a microchannel for microfluidic  applications. European J. of Scientific Research, Vol. 39(2), pp.  183-192.

• Aboelkassem, Y. (2009), Dissipations of Intense Vortices. Canadian Journal of Physics, Vol. 87 (6), pp. 685-689. 

• Aboelkassem,  Y. (2009), Blade Vortex Interactions: Experimental Measurements of the  Near- Flow Field. J. of Fluid Science and Technology, Vol. 4(1), pp.  138-155. 

• Aboelkassem, Y. (2007) , Trailing Vortex Filament: A Novel Similarity Analysis. J. of Aircraft, Vol. 44(2), pp. 683-687.

• Aboelkassem,  Y., and G. H. Vatistas (2007), New Model for Compressible Vortices. J.  of Fluids Engineering, Vol. 129, pp. 1073-1079.

•  Aboelkassem,  Y., and G. H. Vatistas (2007), On the Refracted Patterns Produced by  Liquid Vortices. Acta Mechanica Sinica, Vol. 23, pp. 11-15.

• Lee,  T., and Aboelkassem, Y. (2006), Interaction of a Streamwise Vortex with  a Blade Tip Vortex. J. of Aircraft, Vol.43(6), pp. 1956-1958.

• Vatistas,  H. G., and Aboelkassem, Y. (2006), Space-Time Analogy of Self-Similar  Intense Vortices. AIAA , Vol. 44(4), pp. 912-917.

• Vatistas,  G.H., and Aboelkassem, Y.(2006), Extension of the Incompressible n=2  Vortex into Compressible. AIAA, Vol. 48(8), pp. 1912-1915.

• Jawarneh,  A., Vatistas, G.H., and Aboelkassem, Y. (2005), Experimental  Investigations of the Pressure drop in a Sink-Swirl Flow within Two  Disks. J. of Propulsion and Power, Vol. 21(4), pp. 759-760.

• Aboelkassem,  Y., G. H. Vatistas , and N. Esmail (2005), Viscous Dissipation of  Rankine Vortex Profile in Zero Meridional Flow. Acta Mechanica Sinica,  Vol. 21(6), pp. 550-560.

• Vatistas, H. G., Aboelkassem, Y. and Siddiqui, K. (2005), Time Decay of n- Family of Vortices. AIAA, Vol. 43(6), pp. 1389-1391.